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The input RNA pattern described the RNA secondary structure and the sequence consensus motifs as a set of the following parameters: the number of helices, the length of each helix, the loop lengths and the topology of helix pairs.
Human strains with a short RNA pattern generally exhibit subgroup I, G2, P1B[4] specificity, those with a long RNA pattern show subgroup II, G1, G3 or G4, P1A[8] specificity.
To visualize the RNA pattern generated, anti-digoxigenin antibody conjugated with alkaline phosphatase was used (Roche) with 2-hour incubation at room temperature.
The human G5 rotavirus from Cameroon has a short RNA pattern.
We detected rotavirus G5P[6] with a long RNA pattern in a Vietnamese child with diarrhea.
Furthermore, the disappearance of the speckled staining pattern for phosphorylated B-Myb coincided with the reappearance of the diffuse nuclear RNA pattern.
Similar(49)
The system takes the sequencing data and runs it against databases of DNA and RNA patterns that indicate sensitivity to certain drugs.
Cis- and trans-spliced RNA patterns were assessed by RT-PCR.
Their RNA patterns are closely matched by Gel-A, except during late intestine metamorphosis where Gel-A levels stay elevated.
By comparison, MT3-MMP and TIMP-3 do not share similar RNA patterns during intestine metamorphosis, tail metamorphosis, nor in response to T3.
No other RNA patterns were associated with G12 specificity.
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