Sentence examples for rip indexes from inspiring English sources
Repeat-induced point mutation (RIP) indexes were calculated for 500-bp sliding windows across the genome for both N. tetrasperma strains, using a custom Perl script and the composite index described in Lewis et al. (2009).
The Composite RIP Index (CRI) was calculated as (RIP product - RIP substrate) [ 12].
Because RIP is biased toward CpA/TpG sites, the frequency of RIP within the genome can be evaluated (the RIP index) [1], [29].
The RIP index TpA/ApT, which measures the frequency of the common RIP-product TpA versus a non-RIP like control ApT, was 1.02 within repeats of M. anisopliae and M. robertsii and 1.31 in M. acridum.
RIP index was determined by program RIPCAL [ 26].
RIP index was determined by program RIPCAL (Hane and Oliver 2008).
RIP index (TpA/ApT) exceeding 0.89 was considered as significant (Hane and Oliver 2008).
In addition, whole genome RIP analysis was performed with the script RIP_index_calculation.pl (http://github.com/hyphaltip/fungaltools) by computing RIP indices in sliding windows across all chromosomes.
Thus RIP can be identified by comparing ratios of di-nucleotide frequencies in pre-RIP to post-RIP sequences; these ratios are referred to as "RIP indices" [ 8, 12, 25, 26].
Start with a small piece of paper such as an index card and rip it as much as you can without ripping it into multiple pieces Write your note naturally and then fold your index card with the torn parts so it's about a 1x1 inch square with folds on the edge so it looks like a bit of ripped paper going to the trash.
