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Both 'x' and 'x(2)' are called rigid gaps, a gap of fixed length.
Algorithms that consider only short conserved words (without gaps) [ 5, 20] or rigid gaps [ 4, 6, 21- 23] efficiently and effectively identify short motifs (model 1).
After largely using MAGIIC to identify functional motifs of protein sequences, we observed that restricting intra-block gaps to only rigid gaps can further refine the mining results greatly.
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Based on a bolt-mesh-anchor with a rigid gap coupling supporting technology, the stability of pump chamber can be improved greatly.
The number of rigid gap motifs is 1030.
The evaluation is focused on long and strongly conserved rigid gap motifs.
Table 5 shows the ranking of rigid gap motifs from ten datasets of the Dilimot database.
Average, standard deviation and coefficient of variation of the 1330 rigid gap Prosite motifs.
A rigid gap can match a certain number of successive residues on which mutations are allowed.
Rigid Gap Motifs only contain gaps with a fixed length, i.e., p i = q i, ∀ i.
For each Prosite family, rigid gap motifs were extracted, evaluated according the fourteen measures and normalized for easier visualization.
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