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Instead, their analysis methods are executed on the returned dataset and the results of this execution are presented through the graphical user interface of PMSST.
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Our challenge was to create a research interface that would interrogate the data available and that could return datasets appropriate for research use and effectively anonymised at the research interface.
Of particular interest is a function like svd, which does singular value decomposition, i.e. returning a dataset (several variables) from a variable.
The structure optimization algorithm returns a dataset with links to the new 3D structures.
Given that adjacent probes within a single gene may differ in signal with a standard deviation >1 (on a log2 scale) [35] we have the option to create a very conservative dataset by selectively removing probes using the results of the gcRMA algorithm [11] run on the original raw dataset, in comparison to the dataset returned by the normalization procedure described above.
FluReF run on this dataset returned the same output as on the unaugmented dataset used in Experiment 1, once again matching visual inspection results.
Although SLiMFinder shows some bias, the significance of the most significant motif returned from each dataset is not strongly dependent on dataset size (Figure 4B).
We use the same notation as before with an additional variable selection method S, which for the sake of simplicity only takes two input parameters (number of variables to select and the dataset) and returns a new dataset with only the selected variables.
Each site executed the programs on its virtual data warehouse tables and returned the resulting dataset to the lead site, where site specific study datasets were combined and analyzed.
Predictions are also returned as a dataset URI, whose contents could be subsequently retrieved (Appendix 5).
The most interesting of these were the L.FL.{0,1}L and, overlapping, [FV].L.L motifs, which were found in five out of six C. elegans UPC and were the only significant motifs returned from this dataset.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com