The number of sequences retrieved using each of these approaches were as follows: keyword queries - 62 sequences, pBlast - 18 sequences, CDART -13 sequences, tBLASTN - 159 sequences.
Since the default settings have been known to under- predict or over-predict TM segments, peptides covering the entire range of 6, 7 and 8 TM domains were retrieved using each of the above programs.
All the data comprising 2,881 secondary metabolic reactions was accumulated in the KNApSAcK motorcycle DB (http://kanaya.naist.jp/motorcycle/top2.html) as shown in the main window of the KNApSAcK motorcycle DB; enzyme reactions can be retrieved using keywords of enzymes, species, genes, metabolites, and peptide sequences obtained from a BLASTP search.
To estimate the proportion of repeated sequences in each of the sequenced chloroplast genomes, repeats ≥ 30 bp were retrieved using REPFIND of the REPuter 2.74 program [ 69] with the options -f (forward) -p (palindromic) -l (minimum length = 30 bp) -allmax and then were masked on the genome sequence using REPEATMASKER [ 70] running under the Crossmatch search engine [ 71].
Specimens which represented both urban and rural NSW populations were retrieved using postcode of residence.
Mg+ densities were retrieved using each of the d lines independently, with agreement better than 25%.
Usually, the ASRs retrieved known sequences for proteins associated with RNAse P with a higher E value than by BLASTing with known sequences; in one instance a protein homolog was found in Giardia lamblia using the reconstruction that could not be retrieved using any of the known sequences.
From the starting address of the first table, the coefficient level value can be retrieved using the number of remainder bits as an index.
Surface reflectances were retrieved using an implementation of the 6SV atmospheric correction code, and validated against field collected spectroradiometer measurements over desert, cultivated soil, and vegetated surface targets.
The three-dimensional pressure was numerically retrieved using a solution of the pressure Poisson equation discretized by finite element approximation while taking into consideration the effect of turbulence on the pressure in terms of the Reynolds stress.
