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The retrieved structure was rendered with FirstGlance in Jmol [ 47].
To preprocess the retrieved structure of ApoE4, Protein Preparation Wizard in Schrodinger's Maestro interface [ 38] was used, followed by optimization [ 39].
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In this method, eleven similarity measures and four different values of top retrieved structures were examined.
The explanation example in Table 1 shows the voting profile example of three top retrieved structures, showing that measure S3 is the winner (with 30 votes or points).
In our proposed model, for each similarity measure the top retrieved structures represent the voters; each candidate's similarity measures received a number of points or votes depends on the similarity values of the retrieved structures.
The scope of queries may be varied using a variety of easily configurable options, and the output is annotated to assist the user to filter, sort and understand the difference between query and retrieved structures.
ProBiS compares the query protein structure sequentially to proteins in the PDB and retrieves structures that share local structural similarities with the query protein.
With the use of this measure for texture pre-classification, an optimized retrieval performance can be achieved by selecting the MDFB-based method for retrieving structured textures and a statistical or model-based method for retrieving random textures.
The homepages of the wwPDB partners contain links to the data files themselves, to expository and tutorial material (including news items), to facilities for deposition of new entries, and to specialized search software for retrieving structures.
What he wants instead is a standard way for computers to retrieve structured data from any site.
A related chemical term "swamping" problem has reported in recent exercises to retrieve structures associated with company code names [19].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com