Exact(3)
Each new sect offered a partial discernment of a different essence or way of speaking of it, even if the vast majority of Protestants agreed that the essence could be retrieved best, or, indeed uniquely, through recovery of the central message of the Holy Scriptures.
It is unlikely that the mechanisms whereby any of the studied interventions might decrease de novo adhesion formation might differ in infertile versus fertile target populations; nevertheless, we judge the overall applicability of the retrieved best available evidence in a more general source population to a target population of women suffering from infertility to be limited at the best.
TPSAB1 was the most similar human protein in each case, confirming that we had retrieved best bidirectional hits.
Similar(56)
An in-house script was used to retrieve best matches from the outputs of BLASTn and tBLASTx text files, retaining the following information: gene identifier, description, BLAST score, percent identity, alignment length, reading frame, and database name from the top-scoring alignments.
We then retrieved the best hit orthologous sequences using the reciprocal best hit method described in Hulsen et al. (2006).
The colour indicates if the node was classified inside the community which retrieved the best Jaccard similarity (black) or not (red).
There seems to exist an optimal phylogenetic distance between the added orthologs, for which all algorithms retrieved the best results.
For each gene, we retrieved 50 best hits at the maximum from the database, and aligned them to the candidate sequence using MUSCLE [ 73].
The retrieved reciprocal best BLAST hits from the different species and the quality of the multiple sequence alignment allowed us to confirm the high homology of these 54 proteins to the murine Jmjd6 protein.
RAD contigs were annotated using Blast2GO software [ 40], and were submitted to the NCBI nr protein database where an E-value of 10e-3 or lower were retrieved (20 best hits recorded).
We retrieved the best reciprocal blast hit (E value 10−10) between transcripts of each strain with genome annotation and the 3D7 strain and performed the nucleotide alignments with tranalign from the EMBOSS package (Rice et al. 2000) after aligning the corresponding proteins with MAFFT (Katoh et al. 2002).
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