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In addition, a dedicated search engine is provided, allowing users to retrieve models based on textual queries.
While it currently uses SBML as its core model format, one can nevertheless retrieve models in many alternative model encoding formats.
For instance, taxonomical search queries are expanded to take into consideration the relationships between taxons; a search for "mammalia" will additionally retrieve models annotated with "Homo sapiens" and "Mus musculus," since they are descendants of the original query term.
Besides the analysis tools built into the web interface, BioModels Database offers a variety of useful features and tools to enable other software to programmatically search and retrieve models or submodels, construct large models from components, and access additional up-to-date information.
This in turn can enable members of the biomedical and life science communities to search and retrieve models, or parts of models, relevant to their research topics, whether that topic is a disease, a biological process, a given molecular complex, or something else.
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This in turn requires systems that allow researchers to quickly retrieve model predictions for visualization and analysis.
Our concept, when implemented in open and private model repositories, supports modelers and biologists in retrieving models and scientific findings, fosters the exploration of published models and increases model reuse.
Starting from a real CAD model or from an abstract query model, the algorithm retrieves models from the database by solving a matching problem.
For the three alignments, the best evolutionary model under the AIC criterion was rtREV [ 28], a model originally developed from the analysis of retroviral sequences but which has been shown to be one of the most commonly retrieved models for bacterial sequence alignments [ 29].
This application retrieves model data using internal web services and renders this information in the web browser.
Additionally, visual data fusion for the current process of retrieving, modeling and visualizing as-built information is studied in (Zhu & Donia 2013).
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CEO of Professional Science Editing for Scientists @ prosciediting.com