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This property is captured by the asymmetry of S. The observed similarity SO of pairs of experimentally verified cross-reactive epitopes (x,y) is to be compared to unrelated peptides (zi) which retain the sequence identity of (x,y) but have an otherwise random amino acid on non-identical positions.
Alignments stored in this format retain the sequence and genomic position information for the aligning sequence ranges.
To retain the sequence with the longest ORF for each cluster, we took the transcript or CAP3 contig with the longest ORF in each cluster.
To retain the sequence information associated with as many of the 1570 mapped loci as possible, the concept of "bin loci" was used [ 42] allowing a total of 3329 markers to be anchored on the map (Additional file 2).
Similar(56)
First, all tagging primer and SRAP primer sequences were eliminated from the Solexa paired-end sequences to retain the sequences that corresponded to the sequenced genomic parts.
After this small modification to our setup phase, we snapshot running instances which gives us a slightly modified start point but otherwise retains the sequence described above.
When two consensus sequences overlapped at a given locus, we retained the sequence with the highest score and truncated the other.
Previous sequence analysis of GGA4 [ 1] suggested that GGA4p retains the sequence properties (e.g. high gene density, high recombination frequency) of the microchromosome it once was.
Analyses of the gene structure indicated that the longer PASD1_v1 cDNA appeared to have retained the sequence from intron 14, whereas this is removed in PASD1_v2.
For each result that was retained the sequence corresponding to the BLASTN hit, i.e. positions 52 271 of the Yg6 element, was extracted, along with 1000 bp of both 5' and 3' flanking DNA sequence.
Cancode was adapted from CN-LOGIT and consists of three parts: (1) micro-level analysis in real time, retaining the sequence of events, (2) event counts, and (3) macro-level analysis of consultation style and effect.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com