Informed consent was obtained prior to interviews and participants retained a duplicate copy of the informed consent protocol.
Informed consent was obtained prior to the interviews and participants retained a duplicate copy of the informed consent protocol for their records.
In this case, zebrafish seems to have retained a 3R duplicate of one of these genes (Dre12a) which has a copy on Dre3.
Supporting evidence for this event is both karyotypic and genomic, in that salmonids still retain a large amount of duplicate gene expression within their genome.
These arrangements are of interest due to the fact that herein we report that synteny blocks derived from the E and K ancestral chromosomes along with three other ancestral linkage groups appear to retain a high degree of duplicate sequence expression within the genomes of both rainbow trout and Atlantic salmon.
BranchClust [ 68] is an example of such an approach, which allows the user to retain a certain proportion of duplicates from a subset of genomes in a cluster.
However, if the duplicate pseudogenes retain a functional role in translating overlapping genes, they may not be deleted from the mitogenome, as seen in parrotfish mitochondrial tRNA pseudogenes that are retained as punctuation marks for mRNA processing [ 54].
Our results show differential retention and loss in the LPO lineage following this gene duplication event resulting in the cow species retaining an alternative duplicate copy to the other mammals in the dataset, as shown in Figure 3b.
Since the most recent WGD event in the Arabidopsis lineage, only 14% of the original gene pairs present in the ancestral tetraploid have been retained as a duplicate pair in the extant Arabidopsis genome, i.e., for the remaining 86% of ancestral gene pairs, one member has been lost [ 32].
This analysis has shown that the soybean genome is a mosaic of sequence conservation models for a paleopolyploid genome with some regions retaining all duplicate genes while other regions retain only one divergent duplicate gene.
Soybean retained a large proportion of duplicate genes from the most recent WGD with published estimates ranging from ∼43% to 68% of genes retained (Schmutz et al. 2010; Severin et al. 2011).
