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At the stage of implementation, they will play a key role in revising existing curricula, textbooks, or tests or designing new ones based on the results of alignment studies.
The average sequencing depth and coverage was calculated using the results of alignment.
A consensus sequence for the p20 and p10 domains was established based on the results of alignment.
Here, we describe the Fraxinus game, the results of alignment comparisons, the response the game received, and details of parameters fitted to replicate player dynamics.
To discard the false-positive results of alignment error derived by the homologous gene family, we filtered out connecting sequences having high-scoring alignments in both genes.
Nevertheless the phylogenetic results of alignment did not provide species or geographic structure distributing the sequences across five branches without a distinctive pattern (see Additional file 6).
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Duplicate hits were manually removed before sequences were aligned using M-Coffee [ 110], combining the results of alignments using Muscle [ 111], Mafft [ 112], ProbCons [ 113], PCMA [ 114], and Fsa [ 115].
The results of alignments all perfectly matched with DNA sequences anticipated after sequencing PCR products (data not shown).
The results of alignments also revealed that Glu141, Glu237, Glu238, Glu292 and Glu591 were conserved amino acids among these GHF5 β-mannosidases.
In order to test if the identification of FOX-domain matrices is merely an effect of the general AT-richness of the CNS regions we check carefully results of alignments of all other "AT-rich" matrices in TRANSFAC.
The protein distance matrix method we have developed for phylogeny reconstruction utilizes all available sequence information and calculates protein distances from the results of alignments of protein sequences between species.
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