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Finite element programs can be separated into three basic parts: data input module and pre-processor, solution module, and results module and post-processor.
Based on these results, module 266, for example, includes three proteins Q92QS6 (Smc01792), Q92QS4 (SMc01794) and Q92VP9 (Smb21071) [see Additional file 2].
Again based on these promising results, module 208, for example, includes two nodulation proteins: nodP2 (Smb21223) and nodQ2 (Smb21224); and the novel protein Q92VH5 (SMb21225) [see Additional file 2], therefore, being tempting to speculate the participation of the latter in nodulation.
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Table 2 Mutation analysis results Modules Experiment Percentage of mutants killed mutation score % Equivalent classes Boundary value analysis Logical Name Op.
Each time two overlapping seed modules were merged if and only if the resulting module still had a Q ≥0.66 and a P-value <10−4.
The resulting module 1 was validated for its inherent deubiquitination activity.
The resulting module reveals these processes by accumulating metabolic pathways involved in glycolysis/gluconeogenesis and carbohydrate metabolism, pentose phosphate pathway, the metabolism/catabolism of certain amino acids starting from pyruvate, including e.g methionine, lysine, phenylalanine, valine, arginine, tyrosine, threonine.
We repeated each experiment with different modules, here results for module 1 and module 2 are described.
The resulting modules are then connected in a token ring structure to form the actual PET system.
For visualization, the resulting modules were plotted using Cytoscape [ 37].
The resulting modules were used to remove genes that were yet inconsistent with expectations based on color phenotypes.
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