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More generally, DeDaL allows the application of dimension reduction of the multivariate data associated with the nodes of any Cytoscape network, optionally using the structure of the network, and exports the results for further analyses by any suitable algorithms.
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Unfortunately we were unable to include samples from South American Gymnopaxillus species, so our results call for further analyses including more markers and samples from this group.
So, we decided to use only the mapping results of TIGR4 for further analyses and to not use results from the other assemblies.
Outliers' analysis was conducted using RClimDex software package, the outliers are daily values outside a region defined by the user and the procedure are discussed within the methodology section then the results are used for further analyses.
Nr4a1 and Adamts5 were selected from the resulting gene list for further analyses.
After a practice trial, tests were performed at least 3 times and the best result was used for further analyses [ 18].
When the 5′-RACE tags were mapped to mRNA isoforms of the same gene, only one mapping result was kept for further analyses.
In cases where both imputation and genotyping results were available for a specific SNP, genotyping results were always used for further analyses.
Hence, we retained GERMLINE's results with ShapeIT phasing for further analyses.
We selected the probe (A_24_P183292) with the most significant results (Log rank p=0.003) for further analyses.
All the 14 selected SNPs gave high quality results and were used for further analyses.
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CEO of Professional Science Editing for Scientists @ prosciediting.com