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The resulting clusters for each block at the end of the video constitute the direction model.
The idea is that while we cannot say something about the correctness of the resulting clusters for one name, we can definitely show that the clustering is wrong when a cluster is generated from publications from both names.
The resulting clusters for each species were then used to assess tripeptide over-representation across protein families.
The resulting clusters for the 106 patients predicted by WKM and HMM-Mix are included in the Supplemental Material.
Because real regulons can be of varying sizes, we performed k-means with k = 50, 100, 200, and 250, then used all the resulting clusters for further analysis.
Table 1 Resulting clusters for RFX ANOVA testing differences between violent offenders (VOF) and non-offender controls (NOC).
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Only the tightest resulting cluster for each GO term is kept, defining the initial cluster configuration {C j } G where j stands for j-th cluster and G indicates these clusters are from GO terms.
The number of resulting clusters varied for each dataset from 1 to 65.
The resulting clusters were evaluated for confidence with the 99th and 95th percentile.
Subsequent application of Markov clustering independently to these disjoint graphs, and collation of the resulting clusters, yielded MACHOS for our protein dataset.
The resulting clusters provide building blocks for biologically meaningful groups of markers.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com