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Sampled trees from the posterior distributions of replicate analyses were pooled and parsed with MrBayes to construct a majority rule consensus tree and to calculate posterior probabilities (PPs) of all resulting branches.
This can be largely reflected by the statistic supports of AU/BP values of resulting branches.
Define the dissimilarity matrix D, whose (k, j th element is d k,j; 5. Conduct hierarchical clustering with matrix D. Apply the dynamic tree cut approach to cut the clustering tree (dendrogram) and identify the resulting branches as gene modules [ 14].
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We also introduce problem-specific logical restrictions, constraints that reduce the feasible region and the resulting branch-and-bound tree with minimal reductions in optimality.
In particular, once the best solution of the j th branch is found ahead of the others, the resulting branch distance d j is recorded and shared with other branches to speed up the overall search process.
The resulting branching pattern of similarities between islands and species on them is characteristic of evolutionary trees, and of the hierarchy of traits that biologists use to reconstruct evolutionary history.
The robustness of the resulting branching patterns was tested by bootstrap analysis with 500 replications.
Surprisingly, the resulting branching pattern did not deviate dramatically from the supertree.
The resulting branching pattern of two affected ducts (dashed lines) illustrates how a combination of end bud forward movement, avoidance of nearby obstacles, and bifurcation was adapted to achieve open architecture.
Thus, fitting a tree to this data is analogous to fitting each novel S. Typhi isolate into the phylogenetic structure defined previously [ 5], and the resulting branch lengths reflect genetic divergence only at the assayed SNP loci.
The switchgrass residue resulted branched tetradecanoic acid and hexadecanoic/hexadecenoic acid (C17, 43.7%), and octadecanoic/octadecenoic acid (C19, 55.6%) methyl esters at 48 h.
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