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The resulting alignment consisted of 618 columns of aligned amino acids.
The resulting alignment was then manually adjusted so as to align the conserved helicase motifs.
In total, 206 VipA sequences were aligned using MUSCLE [ 49] and the resulting alignment was visualized with BioNJ [ 50].
The resulting alignment consists of 68 genes, 52 species and 15,554 unambiguously aligned positions.
The resulting alignment was manually curated using Jalview [ 46], and poorly aligned regions at both ends were trimmed.
The resulting alignment is corroborated by genomic position and by molecular weight of aligned ORFs.
This representation significantly decreases the computation time and enhances the resulting alignment.
At first, we visually check the resulting alignment, and count the number of (manifestly) correct and wrong occurrences.
The resulting alignment and phylogenetic tree are used as a guide to produce new and more accurate weighting factors.
The resulting alignment was then manually corrected.
The resulting alignment is used as input for Modeler4.
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CEO of Professional Science Editing for Scientists @ prosciediting.com