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The average areas under the curve (AUC) as measure of prediction accuracy for OG and TSG classifications were 84.21% and 92.17%, respectively (Materials and Methods).
Genes assigned in the LCA to Modules 1 and 5 tend to persist in those modules (Module Stability 94% ± 0.5%and84%4% ± 1.2%, respectively, 'Materials and methods').
Equivalent figures for indels were in keeping with the increased difficulty of scoring these variants from low-pass sequencing data at 84 and 20.7%, respectively (Materials and Methods; Supplementary Material, Fig. S3 and Tables S4 7).
Solid lines represent models of Δ x based on Equation 3 for SSB wrapping N w = 65, 56, 35, and ∼17 nt (purple, blue, green, and red, respectively; 'Materials and methods').
To test this possibility, we performed RNA-seq and quantified changes in gene expression as well as AS in HEK293 cells upon RBM10 knockdown (KD) or overexpression (OE) respectively (Materials and Methods Section).
Module 1 and 5 are the least dynamic as reflected by the average proportion of genes that join (11% ± 1.6% and 17% ± 1.7%, respectively) or leave each module (6% ± 0.4% and 16% ± 1%, respectively) between each pair of ancestor and child species in the phylogeny (Module Expansion Index and Module Contraction Index, respectively, 'Materials and methods'; Figure 5D,E).
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For OPSCC and OSCC, respectively, material from biopsies and resection specimen was used.
sinensis (the Chinese softshell turtle), respectively (supplementary material S1, Supplementary Material online).
Finally, R and S are set to the union of the reactions, respectively starting materials, of all of the synthesis plans created.
Among these, 80 proteins and 49 proteins were from common and unique pathways respectively (Supplementary materials).
We then calculated the integrated excitatory and inhibitory conductances (GE, GI, respectively; see 'Materials and methods').
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