In rice, Panaud et al[ 42] observed that 11 out of 20 putative CGG-containing clones and 3 out of 20 TCT-containing clones did not contain the respective repeat motifs, although they did contain CG and AT rich regions, respectively.
A considerable number of burglaries within each year occurred at the same households with respective repeat burglaries rates of 41 and 45%%.
Likewise, AC, ATC, and ACAT are the second most abundant motifs in their respective repeat classes.
The grouping of SSR motifs into respective repeat classes was performed following the method of Jurka and Pethiyagoda [ 70].
As described in Novak et al. (2010), graph conformation of a specific cluster revealed features of the respective repeat family.
The consensus sequences are shown in Supplementary Fig. S1 together with alignments of the respective repeat units.
The hits with >80% similarity were taken, and the orthologues were confirmed by BLAST searching against the respective repeat databases.
The consensus sequences of the DMA1 and DMA2 families were defined by the highest frequency base at each position of the respective repeat units (fig. 2 A ).
However for the purpose of summarising this data in Table 3, the maximum value was reported for each respective repeat family.
For the de novo method, we have used RepeatScout and RepeatModeler to predict novel repeats from the genomic scaffolds and masked the genome with the respective repeat element using RepeatMasker.
The repeat pattern summary displayed on the organism specific page are clickable links, which redirects and give further information on the start and end of the SSR repeat containing tract, Motif and the occurrence of the respective repeat pattern across the genomes.
