Collembase is a resource of sequence data on the springtail F. candida.
Given this rich resource of sequence information, we examined in more detail the presence and distribution of homologs of shared single copy genes in this dataset.
The growing resource of sequence data provides the non-trivial challenge of converting genetic information into inferences of infectious disease dynamics.
Large-scale experiments such as the 1000 genomes (http://www.1000genomes.org/page.php) and the UK10k (http://www.uk10k.org/) projects will provide an excellent resource of sequence data and derive variant information for the scientific community.
The flexibility to roll-your-own workflow enables the user to tackle both prokaryotic and eukaryotic assembly projects, tailoring the amount of work to be done based on the availability of computing resources, quantity of sequence data and complexity of the genome.
These properties predict that UniformMu FSTs will be a resource of sequence-indexed mutations that is simple to use for reverse genetics applications.
The GoNL imputation reference set is a resource of sequenced data from the Netherlands, where a group of 250 trio's from all Dutch provinces was sequenced at a depth of ~12 13×.
The constantly increasing public resources of nuclear sequence data provide a vast pool for nuclear marker development.
Another common evaluation method in human studies is to compare variants from NGS data to those of array genotyping (e.g. [ 16– 18]), to results from the 1000 genomes project [ 19], or to other existing resources of human sequence (i.e. [ 20]).
However, due to the limited resources of watermelon sequences, SSR markers in watermelon have been scarce.
