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In addition, many resources of predicted miRNAs like miRGen (58), miRWalk (39), mirDB (38), microRNA.org (35) also exist.
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In addition, the National Center for Biotechnology Information reference sequence (NCBI RefSeq) database provided an alternative resource of predicted V. vinifera mRNA transcripts [ 33].
As our prediction approach included several manual curating steps and followed a highly conservative policy minimizing false positives, this collection represents a reliable resource of predicted chlamydial outer membrane proteins.
In order to obtain a global view of diseases and transcription factors, we have used our integrative methodology to perform a large-scale analysis on the combination of the Phenopedia disease-gene catalogue [ 16] and a recent resource of predicted target genes of TFs [ 12] (where the datasets of 1010 diseases and 446 TF motifs are constructed as detailed in Methods).
The HOCTAR database (db) is a publicly available resource collecting ranked list of predicted target genes for 290 intragenic miRNAs annotated in human.
GAP integrates similar resources to predict level of gene association; however, its strengths comes from novel semantic similarity measure (introduced in the next section) and from using sophisticated natural language processing techniques in GoPubMed [ 21] to elucidate accurate information about genes from PubMed.
Add resources only to teams that have an increasing flow of predicted results.
Stress because of job demands and a lack of resources predicted exhaustion and cynicism.
The work presented demonstrates the successful integration of several bioinformatic resources to predict and validate TFs interacting with conserved sequence motifs in co-regulated genes.
The complete set of predicted annotations is available as a machine readable resource description framework graph.
Sheer numbers and the rapacious consumption of resources, he predicted glumly, would condemn the human species to the same fate as the smallpox virus.
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