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The aims of the this database are: (1) to develop an organized and integrated web resource for DNA barcodes for medicinal species identification, (2) to collect and integrate the basic information of medicinal materials and their DNA barcodes, (3) to develop online tools and resources for sequence comparison.
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For sequence comparison, we applied NCBI resources and tools including Gene [ 49], NCBI-BLAST2 ftp://ftp.ncbi.nlm.nih.gov/blast/ and the JGI genome browser http://genome.jgi-psf.org.
His research interests are in molecular evolution and computational tools for sequence comparison.
We reported here a new method for sequence comparison.
Vista was used for sequence comparisons [ 58].
Slater, G. S. & Birney, E. Automated generation of heuristics for biological sequence comparison.
Slater, G. S. C. & Birney, E. Automated generation of heuristics for biological sequence comparison.
This chapter discusses the recent advances in GPU solutions for two main sequence comparison problems, pairwise sequence comparison and sequence-profile comparison.
To overcome this problem, NCBI created a PASC (Pairwise Sequence Comparison) resource [ 15], where the same protocol is used for both procedures.
All sequence comparisons were run on a Paracel Genematcher using the Smith-Waterman [ 55] algorithm for pairwise sequence comparisons and Hidden Markov Models for sequence-to-profile comparisons.
The EMBOSS tools Needle and Stretcher (https://www.ebi.ac.uk/) were used for pairwise sequence comparisons.
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