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Exact(4)
That DNA sequences for the nominal outgroup, the confamilial Nitrosarcheum sp. was grouped within the lower branch for Nitrosopumilus species was unexpected, and can be explained by: (1) too little sequence having been analyzed to resolve true phylogenetic relationships, or (2) improperly resolved taxonomy having been incorporated into the archived database.
Our results highlight the importance of extensive sampling to differentiate between native and introduced ranges in widespread marine invertebrates and illustrate the difficulty of correctly identifying non-indigenous species in marine invertebrates with poorly resolved taxonomy.
Management of such species thus needs to be a priority, but the poorly resolved taxonomy of many ecosystem engineers represents a major obstacle to correctly identifying them as being either native or introduced.
Therefore, to save computational cost, in case a resolved taxonomy for a group of genomes is not available, one could first infer a partial taxonomy from a subset of the genomes with an accurate method like GDBP and then use the taxonomy to learn a signature based distance metric that in turn could be applied to infer taxonomic distances for the remaining genomes.
Similar(56)
In the past decades, the applications of diverse molecular techniques have gained increasing importance in resolving taxonomy, species identification and phylogenetic questions.
Bond and Platnick, in their 2007 revision, resolved the taxonomy of the genus and described six new species.
These resulting taxonomy assignments were used to resolve the taxonomy of highly abundant community members.
Palm and Stewart concluded that a study of specimens from various areas of their geographical ranges would be needed to fully resolve the taxonomy of these related species.
In conclusion, at the dawn of sponge barcoding our data indicate the great potential for DNA technologies to assist in resolving the taxonomy of sponges.
Even if no significant alignment is possible, the program can resolve the taxonomy of any query using IMMs.
In summary, despite the sparse efforts to resolve the taxonomy of the Haemulidae, its generic nomenclature is still unstable.
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