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The poorly resolved relationship with the lineage L3 makes it impossible to know if Iberia acted as a refugium (with a strong bottleneck) or has been secondarily colonized by populations from C.E. Europe.
We present a resolved relationship of Strigiformes Psittaciformes clade with Piciformes Coraciiformes (referred to as SPPC henceforth) with support values PP = 1.0 and ML = 58%, which improved upon the support values (PP = 0.60 0.64, ML = 20%) reported by Pacheco et al. (2011) who found the same relationship.
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Most importantly, applying matK in fern phylogenetics better resolved relationships among families, especially within eupolypods I and II.
However, the genus as a whole is strongly paraphyletic and will probably be fragmented once further studies have resolved relationships to a finer detail.
We constructed an initial composite phylogeny of the Concord flora using Phylomatic [41] and further resolved relationships above the generic level based on the literature.
Concatenating 16S rDNA sequence with other housekeeping genes such as trpB had previously resolved relationships between Streptomyces species with success [25].
Although sequences within ciliates, stramenopiles and kinetoplastids were better resolved, relationships between these major taxonomic groups were unresolved at phyla levels.
Within Solanum, all 12 major clades identified by Weese & Bohs [ 43] are recovered, with nearly fully resolved relationships among them.
Populations from North America and Upper Central America formed a monophyletic group, while Middle Central America showed evidence of rapid radiation with incompletely resolved relationships.
The plastid phylogeny successfully resolved relationships among the major clades of Salix, but resolution within subgenus Salix s.l.l
Overall, Nomocharis and the N-N lilies exhibited poorly resolved relationships within cluster II of the plastid phylogeny and did not form a monophyletic group.
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