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If the state of a character exists outside the ingroup, it is a general trait and will not help resolve relationships within the ingroup.
16S rDNA has been known to be too conserved to resolve relationships among closely related strains [24].
ascertaining that the selected markers exhibited enough variation to resolve relationships within the groups of non-model fungi considered.
We envision that PHYLORPH will constitute a useful tool for obtaining new and accurate phylogenetic markers to resolve relationships between closely related non-model fungal species.
We postulated that gene regions highly sensitive to substitutions (i.e. highly polymorphic "mutation hot-spots" [30]) could be potentially informative to resolve relationships between closely related taxa.
Thus while low likelihood ratios are not encouraging for the SNP panel to resolve relationships, this particular contrast would cause Mendelian inconsistencies if inappropriate adjustments were made to the pedigree file, thus ensuring such a mistake would not be made.
Comparative genomic analysis using these ESTs to better resolve relationships between crustaceans and hexapod insects leads to the general conclusion that branchiopod crustaceans may be more closely related to insects than other malacostracan crustaceans.
For gauging the ability of SNP sets to resolve relationships we genotyped a series of families from the Centre d Etude du Polymorphisme Humain (CEPH) collection [15] available through The Coriell Cell Repositories http://ccr.coriell.org.org
This study could not resolve relationships among many microhylid subfamilies.
Our phylogenetic analyses did not resolve relationships within octocorals.
Such genes promised to have sufficient nucleotide variation to resolve relationships between closely related Caenorhabditis species.
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