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(ii) If an interacting partner of the protein does not exist, a probe peptide made up of all alanine residues, equal in number to the residues of the peptide to be designed, is docked to the binding site using AutoDock.
If the interface requires U residues but only W were correctly predicted to be in the interface, then sensitivity is defined as: SE = W/ U Significance of prediction is the probability P of randomly choosing a patch of residues equal in size to the predicted patch, but with equal or better correspondence with the actual binding site than the predicted patch (Carl et al., 2008).
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The hydrogen productivity of sorghum extract plus that of sorghum residues equaled the hydrogen productivity obtained from the sorghum stalks suggesting that the process could be designed as a single-step process, thus avoiding the separate fermentation of soluble and insoluble carbohydrates as well as the extraction process.
As expected, the molecular masses are approximately the sum of two contributing moieties, because the chimeras have residues equaling to the sum of Xyn, Glu, and linker peptide.
Nine of the 20 amino acids shown in this diagram are encoded by tRNA isoacceptor codons used 15% of the time or less in P. falciparum, where the summation of synonymous codons that could encode each residue equals 100%.
The same group also identified all resistin-related genes, which were named as ten-cysteine-proteins (XCP) for their characteristic C-terminal stretch of 10 cysteine residues with equal spacing (Table 1).
The strategy is to build a subset that includes all catalytic residues and equal number of noncatalytic residues selected randomly.
Both TBK1 and IKKε are induced in response to obesity-dependent inflammation, and appear to phosphorylate PDE3B on the same residues with equal efficiency.
Note that the MCC, sensitivity, and specificity reported here are based on balanced data, that is, the numbers of catalytic and noncatalytic residues are equal.
The mean GC-skew values were approximately zero in regions upstream (<-0.2 kb) from the TSS, as the numbers of C and G residues were equal in both plant species.
The C-terminal tail contains one highly ordered α-helical segment (CTN, residues 1397 1413 equal to 1162 1178 heNOS), which lies at a negatively charged interface between the FMN and FAD subdomains.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com