Sentence examples for residues alignment from inspiring English sources

The best sequence similarity is with leguminous plant lectins, including the known metal ion binding residues (alignment in additional file 13).

GLAM2 implemented a scoring scheme for alignments in which any identical residues or similar residues alignment happens in the same key position is rewarded while deletions and insertions are penalized.

Predicted secondary structures (α-helices; grey rectangles, and turns/loops; lines) are shown as a cartoon line diagram and α-helical secondary structure shown as cylinders correspond to the E. coli DmsD (panel B; 3EFP, 3CW0, 3U41 [ 50, 57, 60 ]) or S. massila TorD (panel A; 1N1C [ 61 ]) crystal structures below both residues alignments.

Tm-Align performs optimized residue to residue alignment based on structural similarity using dynamic programming iterations.

Given a set S of k sequences to be aligned, we would like to analogously represent their residue alignment affinity by a k-partite weighted graph.

Correlation analysis of Slig values to amino acid sequence similarity scores – obtained via multiple sequence alignments – was performed for individual residue alignment positions and sets of residues on 13 DHFRs.

Indeed, when performing an all-AA residue alignment, 3VRI has a 96% overlay similarity with 3VRJ and an extremely low pairwise RMSD equal to 0.15 Å (see Fig. 3).

The representative protein structures from the respective clusters were aligned to a reference protein structure of 1YQCa_ and Cα-Cα deviation values were calculated for equivalent residues at all residue-residue alignment positions from the pairwise superpositions.

The reliability of the per residue alignment is color-coded using the CORE index (consistency of overall residue evaluation) [35], where the majority of residues were in the average to good range.

Transformed probabilities, called residue alignment affinities, represent weights of an alignment grapha.

Chitinase itself is also encoded (GenBank: AAB81847.1; 117 residue alignment, E-value < 10−6).