Sentence examples for residue were calculated from inspiring English sources

Conservation scores of each residue were calculated by taking into account the phylogenetic relationships among the sequences and the similarity between the amino acids in the alignment.

Mean ellipticity values per residue were calculated as  = 3300 m ΔA/(l c n), where l (path length) = 0.1 cm, n = number of residues, m = molecular mass in daltons and c = protein concentration expressed in mg/mL.

Then contact numbers for each residue were calculated by averaging each residue's contact numbers over the production run.

In addition, secondary structure and solvent accessibility for residues in structural homologues corresponding to mutated residue were calculated.

To investigate the influence of amino acids on prediction performance, the sensitivity and specificity associated with each residue were calculated.

The intensity reduction ratios of each residue were calculated by dividing the signal intensity in the presence by that of the absence of spin-labeled peptides.

The solvent accessible surface for each residue was calculated using the Accelrys Discover Studio software package employing a water probe with a radius of 1.5 Å and a cutoff of < 5 solvent accessibility for buried residues (Chothia 1976) based on the chain A of the BSLA X-ray crystal structure (PDB ID: 1I6 W) (van Pouderoyen et al. 2001).

The interaction energy between the protein and the trymethylated/unmethylated lysine residue was calculated by INTE command of CHARMM.

These sub-alignments are made with respect to the most conserved residue in each column; hence the most conserved residue is calculated for each column, and the sub-alignment consists of all sequences with that conserved residue at that position.

(The Voronoi volume of a residue was calculated by summing the Voronoi volumes of the atoms that belong to the residue; only half of the residues with smaller volumes are used for comparison as surface residues with [sometimes infinitely] large volumes are not meaningful).

The change in ASA (ΔASA) of the ith residue