Sentence examples for residue alignment from inspiring English sources

Tm-Align performs optimized residue to residue alignment based on structural similarity using dynamic programming iterations.

Given a set S of k sequences to be aligned, we would like to analogously represent their residue alignment affinity by a k-partite weighted graph.

Indeed, when performing an all-AA residue alignment, 3VRI has a 96% overlay similarity with 3VRJ and an extremely low pairwise RMSD equal to 0.15 Å (see Fig. 3).

Correlation analysis of Slig values to amino acid sequence similarity scores – obtained via multiple sequence alignments – was performed for individual residue alignment positions and sets of residues on 13 DHFRs.

The reliability of the per residue alignment is color-coded using the CORE index (consistency of overall residue evaluation) [35], where the majority of residues were in the average to good range.

Chitinase itself is also encoded (GenBank: AAB81847.1; 117 residue alignment, E-value < 10−6).

In a consistency-based algorithm, the reward for aligning two residues is estimated from a collection of pair-wise residue alignments named the library.

Amino acid residue alignments were generated using MacClade 3.05 (26 ) and ClustalX (www.softpedia.com/get/Science-CAD/Clustal-X.shtml).

The representative protein structures from the respective clusters were aligned to a reference protein structure of 1YQCa_ and Cα-Cα deviation values were calculated for equivalent residues at all residue-residue alignment positions from the pairwise superpositions.

We replaced the previous 13-residue alignment with an extended one, which includes Fam20A and Fam20C orthologs with all the residues critical for Fam20C kinase activity highlighted.

As opposed to T0467, extension over the entire domain of a short, 30-residue alignment results in a correct fold prediction for this target.