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A taxonomic expert then reviewed the taxon list and, after verifying taxonomic status in the CoF, requested addition of names or synonyms missing from the TTO using the SourceForge term request tracker [74].
Additionally, a term request tracker (http://code.google.com/p/unit-ontology/issues/list) and a discussion list (https://lists.sourceforge.net/lists/listinfo/obo-unit) allow users to suggest changes and request new features.
Internally, RGD has implemented an ontology development process similar to the SourceForge (http://sourceforge.net/projects/geneontology/) term request tracker system that the Gene Ontology Consortium (14) has used for years.
The ontology request tracker [ 13] is a publicly available tool for users to request and follow updates to the ontology, and terms affected by a current ontology development project are highlighted in the "GO Discussions" section of the term page in the UniProt-developed GO browser QuickGO [ 15].
To identify areas that may be universally more difficult for researchers and thus would warrant the creation of a video tutorial, we compiled web site feedback gathered using the Request Tracker software (2) and cataloged the questions asked via all types of interactions.
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Their 'GO Requests' tracker on SourceForge (http://www.geneontology.org/GO.requests.shtml), where proposals for new terms are made, gets at least three or four new entries every day, all of which are answered within a few days.
The peer performs new requests to the tracker every 20 min (usual period between requests to the tracker [36]) and tries to keep a neighborhood set of at least 50 peers in case there are less than 50 peers in the torrent, neighborhood set sizes are limited to the number of available peers.
Using a proxy-tracker, the peer request is intercepted by the proxy-tracker, and it processes the download as described in Sect.
At the session start time, the peer starts the session in the tracker and requests a list of up to 50 other peers currently online in the same torrent.
ECO development will continue to be responsive to user needs, and we welcome user feedback and requests at the ECO tracker site (http://code.google.com/p/evidenceontology/issues/list).com/p/evidenceontology/issues/list
The system also already includes many features useful for operational management of ancillary studies, including: (1) role- and group-based security; (2) specimen tracking and request management (3) issue trackers; (4) wikis; (5) message boards; (6) file management tools; and (7) client libraries for building custom interfaces.
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