Our SNP resource can be regarded as a reduced representation of outlier regions detected by RAD sequencing, which by itself represents a reduced representation of the whole genome.
In light of these simplifications, our model represents a minimal representation of tumor-associated genetic changes.
The Compound (Metabolite) Interaction Network (CIN) represents a third representation of MINs.
In EDAs, modeling is achieved by building a probabilistic graphical model that represents a condensed representation of the features shared by the selected solutions.
Thus we are of the opinion that our inferred B-cell C3NET gene regulatory network represents an average representation of B-cell lymphoma reflecting different phenotypic subtypes with which the information conveyed by the gene expression values is associated.
At both the national (SwAsp) and local (UmAsp) scales we believe that our sampling represents an unbiased representation of wild-growing mature trees, with sampling taking place with no knowledge of, or consideration for, sex or the presence of flowering.
E-values for over-represented features are indicated with the symbol ‡, otherwise the E-value represents an under-representation. Features include domain/architecture types, PTMs, and disorder classifications based on three disorder types (loops/coils, hotloops and rem465) and percentage of sequence containing the disorder type.
E-values for over-represented features are indicated with the symbol ‡, otherwise the E-value represents an under-representation. Features include domain/architecture types, PTMs, and disorder classifications based on three disorder types ("loops/coils", "hotloops" and "rem465" as defined by Linding and colleagues [ 26]) and percentage of sequence containing the disorder type.
For R/G ratios less than 1 (i.e., a negative log2 value), the bar will be green and drawn below the chromosome; a green bar thus represents an under-representation (deletion or depletion, i.e., lower copy number) of that gene in the wine strain relative to S288C.
The height of each red or green vertical bar is proportional to the log2 of the red:green (R/G) ratio for a gene; if the ratio is greater than 1 (i.e., a positive log2 value), the bar will be red and drawn above the chromosome; a red bar thus represents an over-representation (amplification) of that gene in the wine strain relative to S288C.
