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Unsurprisingly, vegan diets and diets with a low share of livestock products (for example, the VEGETARIAN variant) show the largest number of feasible scenarios, in line with other studies19,33,40, representing pathways that also make it possible to avoid the otherwise virulent grazing constraints and significantly reduce the option space.
The potential of representing pathways in 3D environments is discussed below and elsewhere [ 16, 17].
We further explored the possibility of representing pathways as Boolean functions of biological processes.
Each of these bibliomes was then manually mined for keywords representing pathways, processes and protein domains significantly enriched in mutated genes in the corresponding tumour types.
In this way a statistical link between each miRNAapt and its targeted gene sets (representing pathways or transcriptional signatures) was established.
IGV provides a number of predefined gene lists representing pathways from public databases, and users can also create and save their own lists.
Similar(41)
The results of the PGC analysis by probe location also were consistent with those of firing rate producing horizontal strips representing pathway-specific effects.
Heatmaps representing pathway enrichment were generated using Dchip (Li and Wong, 2001) using –log (P-value).
Probes in validation dataset = number of probes representing pathway genes in the validation dataset.
Probes in reference dataset = number of probes representing pathway genes in the reference dataset.
Single dashed arrows represent pathways that were not used during flowering.
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