Exact(4)
Heatmaps representing pathway enrichment were generated using Dchip (Li and Wong, 2001) using –log (P-value).
Probes in validation dataset = number of probes representing pathway genes in the validation dataset.
Probes in reference dataset = number of probes representing pathway genes in the reference dataset.
In this case nodes representing pathway modules have been used to link one compartment to another indicating a series of vesicular transitions and fusions; complex processes in their own right.
Similar(56)
The results of the PGC analysis by probe location also were consistent with those of firing rate producing horizontal strips representing pathway-specific effects.
The potential of representing pathways in 3D environments is discussed below and elsewhere [ 16, 17].
We further explored the possibility of representing pathways as Boolean functions of biological processes.
The ERK/MAPK was the most highly represented pathway, although it was over-represented in only four of the 11 data sets (Table 3).
Interestingly, Pathways in cancer (05200) was the best represented pathway to which 163 unigenes were mapped.
KEGG pathway analyses indicated that ion transport is the most represented pathway corresponding to DETs upregulated in male pupal heads.
KEGG pathway analyses indicated that proteolysis is the most represented pathway corresponding to DETs upregulated in the female pupal head.
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