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The result indicated that rice YGL138 t) is more closely related to the homologues proteins of the monocotyledonous plants Zea mays and Sorghum bicolor than to those of other species (Figure 5). Figure 5 A phylogenetic tree representing alignment of YGL138 t) protein and its homologues proteins.
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In biology, dot plots are often utilized for representing alignments between sequences.
Finally, G is reduced by removing all nodes contained in representing alignments of the removed child duplicate segments.
These SJ pairs may represent alignment errors rather than AS.
Moreover they excluded all heterozygous sites, as C. reinhardtii is haploid and heterozygous sites likely represent alignment or sequencing errors.
All have homologous regions in the chloroplast genome and the high DOC very likely represented alignment of both mitochondrial and chloroplast transcripts since total RNA was sequenced.
For each fusion event, the reliability is directly computed by MMEF using the following equation: where Llen and Rlen represent alignment lengths and Lmn and Rmn indicate mismatches along the alignment.
Verification of the 59 gaps by comparison with pre-existing trace files available in NCBI or by re-sequencing showed that all of these gaps represented alignment artifacts or artifacts due to the sequencing by synthesis technology.
For each method, the top line represents treatment accuracy with different orders of splines, the middle line represents alignment accuracy by adding the criterion that the average time error in the mapping is less than or equal to 24 h, and the bottom line shows alignment accuracy where this tolerance is decreased to 12 h.
In this graph nodes represent contigs and edges represent alignments.
Scores are close to 1 and represent alignments of dissimilar sequences.
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CEO of Professional Science Editing for Scientists @ prosciediting.com