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To calculate the mean of different experiments, like for the FLAG-IP, the normalized signals of each TPR protein were represented in reference to the relative binding of the other TPR proteins.
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Tobacco mature pollen is bicellular when shed, and is predicted to have a unique set of transcripts that are over- and under-represented in reference to phylogenetically advanced tricellular pollen.
In recent days she has also suggested that she has other weapons in her armoury against him, saying: "I do represent other clients in reference to Tiger Woods," adding, however, that "we will not confirm or deny the names of our clients".
The results were normalized to levels of NSE in the same samples and are represented as relative values in reference to the values obtained in the untreated cells.
The cross-sectional line profiles represent the height profiles of surface in reference to the line drawn in corresponding AFM side-views.
Our approach to error modelling is dependent on k-mer choice, which needs to be long enough to capture sequence-context information, but also short enough to be represented in the reference genome to be simulated and the control genomes used for error modelling.
These variations are often not represented in the reference database causing the corresponding peptides to be invisible to MS-based analyses.
In these tables, any allele at a residue in the genome that corresponded to the allele represented in the reference human genome hg19 was regarded as M, viz. the reference or major allele; on the other hand, any allele that differed from the allele on hg19 was regarded as m, viz. the minor allele.
It was, however, interesting to observe that the imputation of the Italian samples was improved more by this combined reference panel, leading us to speculate that populations that are poorly represented in the reference panel benefit more from a large and diverse reference set.
In contrast, the largest class of shared repeats between the non-pathogenic and the reference isolate are those that are not well represented in the reference, the non-LTR retrotransposons (6.4% in the reference and 26.3% shared between isolates) and unknown elements (10.9% in the reference and 35.5% shared between isolates).
Sequence reads containing the allele not represented in the reference genome are penalized as an additional mismatch compared to reads containing the reference allele [ 15], and are less likely to map to the correct genomic location (Additional file 1: Figure S1).
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