Sentence examples for representative tss from inspiring English sources

Periodicity and consistency of nucleosome positioning in the two regions upstream [−500,0] and downstream [0,+500] of a representative TSS: The periodicity of nucleosome positioning surrounding each TSS changes.

Gross mapped counts for each position and TAR were tallied, and the most frequently mapped TSS in each TAR was assigned as a representative TSS, as defined in previous reports [ 33, 66].

For the blastulae, testes, and liver, a representative TSS was defined as the position with the highest expression score among TSS clusters within 500 bp, and >500 bp apart from any neighboring representative TSSs to minimize neighboring TSS effects on nucleosome positioning.

The nucleosome positioning consistency upstream of a representative TSS was negatively correlated with A/T nucleotide asymmetry and A/T count upstream of the TSS.

If multiple TSS-tag clusters were identified for a single gene, then only the TSS-tag site supported by the highest number of tags was selected to be used as the representative TSS.

Next, for each Ensembl TSS, we looked for the closest tag cluster in the range of 200 bp and took the CAGE tag starting site position within the transcriptional cluster supported by the highest number of CAGE tags as the representative TSS position.

Representative TSSs were selected as the position from which the largest number of TSS tags was mapped.

The selected representative TSSs were used for further analyses.

This analysis was performed using representative TSSs, which have a one-to-one correspondence with promoters.

We associated the following parameters with 12,347 representative TSSs in Fig.  1b.

To analyse the T. gondii core promoter structure, representative TSSs and their surrounding sequences were examined.