This database encompasses characteristics representative of alignments manually annotated, including members of a particular enzyme family, according to the Enzyme DB [ 71].
The spatial offset was manually obtained by observing overlapping images of the two maps, while adjusting the offset to a value best representative of correct alignment that correlates with the video.
Representative alignments of teretoxin transcripts of selected Cys frameworks found in Tr. anilis and T e. subulata transcriptomes along with their closest BLAST hit are illustrated in figure 5.
(B ) A representative sequence alignment of eight CENP-I sequences from different organisms is shown, with a focus on the region that, according to the model, may be involved in CENP-M binding.
For each protein domain of a query gene, we constructed a representative data set of alignments by computing all its pairwise alignments with a set of 1,538 protein domains representing all superfamilies of the seven true classes of SCOP [ 17].
In order to ensure that sequences of alignment are representative and diverse, we collected the homologue sequences by using seventeen different sequences as initial query sequences.
Three hundred and thirty-two contigs (0.3%) contained 'strings' of at least six SNPs, suggesting these contigs are likely to include reads from alternative splice variants (strings of SNPs suggest regions of poor alignment representative of alternative splicing, see Methods).
Representative alignments of new TSSs, 5'EST with reported gene models.
The consideration of this absolute number, rather than a relative proportion of all aligned sequences, allows the handling of representative subsets of these alignments, while ignoring positions in which gaps are predominant.
