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Our results thus indicate that properties related to binding are difficult to model from the employed representations of structure while catalytic mechanisms seem to associate well with conserved structural similarity (Table S4).
In an effort to understand the impact of designing for digital genres on users' mental representations of structure, a two-phase study was conducted.
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The argument that soil maps and their legends are representations of structured knowledge is made and discussed with some examples.
Graphic representations of structures were rendered using the program CHIMERA (41).
We will specify evaluation algebras that compute free energies, Boltzmann-weighted energies, shapes and string representations of structures.
We emphasize that although PMML can be used to generate protein secondary structure assignments, its real aim is to generate concise representations of structures, irrespective of the nature of the segments of which they are composed.
Detail aspects of the experimental framework including a substructuring scheme, analytical representation of structure, test specimen design and advanced measurement system are provided.
Shape is a representation of structure.
The graphical representation of Structure results was prepared with Distruct v1.1 [ 60].
As a simple first example, we define the interpretation x that derives the dot-bracket representation of structure x. "" is meant as an abbreviation for "dot-bracket representation".
In addition, RNAmute can use two different structure representations to provide either a fine grained view (dot-bracket (db) notation) or coarse grained view (Shapiro representation) of structure to calculate base-pair distance.
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