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Here, we develop a method to learn functional representations of expression images by using predefined functional ontologies.
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Collectively, these results point to representations of expressions that encode sensory trajectories.
(c) Heatmap representation of expression profiles retrieved by the example genes from Affymetrix experiment GSE6737.
Conventional annotation methods measuring the over-representation of functional categories, such as the performed KEGG-pathway mapping may lack an adequate representation of expression data in the functional specific cellular context.
For each brain region, we assessed the p-value for over-representation of expression of the addiction-associated genes using hypergeometric distribution tests and false discovery rate (FDR) corrections, considering Q-values<0.05 as statistically significant.
Heatmap representation of expression profiles of these tissue-specific genes is shown in Figure 4.
The detected density was representation of expression level of each protein.
The ΔCp value approaches a log2-fold representation of expression levels.
SPSS 12.0 (SPSS, Chicago, IL) software was used for box-and-whisker plots representation of expression levels of specific genes.
In the case of z-score representation of expression values, the two-sample t-statistic is applied.
Heatmap representation of expression profiles of these WRKY family genes under different stress conditions are shown in Fig. 5B.
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