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Typically, these motifs are mathematical representations of conserved sub-sequences, emerging from a noisy background.
Contact: [email protected] or [email protected] 'Sequence logos' are simple graphical representations of conserved elements in multiple sequence alignments.
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The gammaretrovirus HMM homogeneously detected most gammaretroviruslike sequences, and probably gives an accurate representation of conserved gammaretrovirus LTR structure.
Graphical representation of conserved amino acids was done using a web-based sequence depiction tool, WebLogo 3.0 software [82].
The X-plot representation of conserved genes highlighted small collinear regions between Waddlia and Protochlamydia, even though numerous rearrangements occurred, changing gene orientation and position.
The representation of conserved gene classes also provides an approximate indication of transcriptome coverage.
Generated from superimposition of multiple pair-wise BLAT alignments [ 6], an EvoPrint provides an ordered uninterrupted representation of conserved sequences as they exist in the genome of interest.
All genomes in this study showed a comparable degree of completeness in relation to both genome size estimates, based on k-mer distribution and representation of conserved genes [ 40].
(A1 ) Schematic representations of evolutionarily conserved regions in human Repo-Man and Ki-67 proteins (shown approximately to scale).
Overall, our data suggest a low probability of immune challenges from variant WNV T-cell epitopes, due to a high representation of historically conserved sequences of the WNV proteome in the known virus data.
This suggested possible representation of highly conserved genes with some important biological/cellular/molecular functions.
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