They later extended their work using stochastic π-calculus (BioSpi) to support quantitative simulations (Priami et al. 2001) and using Ambient calculus (BioAmbients) for representation of compartments (Regev et al. 2004).
It remains unknown whether in an ordinary foraging situation, in which animals can re-enter multiple compartments at will, place cells can use pure path integration to keep the representations of identical compartments separate.
It is an XML-based language for representation of species, compartments, reactions and their specific properties such as concentrations, volumes, stoichiometry and rate laws.
The representation of subcellular compartments was made with the Cytoscape plugin Cerebral v.2 (http://www.pathogenomics.ca/cerebral/).ca/cerebral/
In addition, samples were chosen such that the tumor and normal counterparts in each case had approximately equal representations of the epithelial compartment, as assessed microscopically.
As mentioned in the Methods section, both tumor and normal tissues were carefully chosen to have similar representation of epithelial compartment.
SBSP is also related to classical pharmacokinetics, 75) with which it shares the representation of biosystems as a set of compartments.
This effort resulted in iMM1415, which accounts for more genes and reactions, distributed over eight cellular compartments, than previously published reconstructions (Table 2) in addition to its representation of eight cellular compartments.
The van has nine cupholders and lots of compartments.
However, these models generally employed only a very small number of compartments for gas exchange - in this paper, we show that such model cannot provide an accurate representation of the particular heterogeneous effects of COPD on alveolar mechanics.
