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The six clusters may be briefly summarized by the descriptions metal ion binding, cell motility, glycoside hydrolase, methyltransferase, ion transport, and GTPase domain, indicating that at least some of these clusters represent interaction with the environment.
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Thus, if a similar notation can be applied to pcb-statecharts, it will be possible to represent interactions with the same clarity.
Examples are shown in Figure 5. Black edges in Figure 5 represent interactions with SVM score higher than 4.0 (indicating strong evidence for interactions between proteins).
An angular persistence force representing interactions with the local tissue is introduced to stabilise buckling instabilities caused by cell proliferation.
If we are looking at a Hamiltonian on (L^2({mathbb {R}}^{nu (N-1)})) with center of mass motion removed or if we have some (v_j) representing interactions with infinite mass particles, then we act on (L^2({mathbb {R}}^{nu N})), and set (R=0).
The IPA software identified a network representing interactions with the growth factors PDGF BB and IGF1 (Figure 4C and S5B-C).
Instead, we decreased the cutoff length so that springs representing interactions with longer distances would be eliminated, assuming that these interactions would be weaker and less important for the conformational change.
The types represent positive and negative influences among network products; the '&' is a boolean AND among signs (the variation of a product is positive only when all the influences it receives are positive); and the '?' represents interactions with unclassifiable effects (either unknown or context-dependent sign).
The rules of the model represent interactions of ligands with ERBB receptors, receptor dimerization, phosphorylation-dependent interactions of adapter proteins with receptors, the MAPK cascade downstream of Ras, PI3K signaling events that regulate phosphorylation of Akt, multiple feedback loops, and phosphorylation events that regulate the above processes.
The first, "mining combinatorial features" (orange panel in Figure 1), represents interaction data with a mathematical model.
They visually represent interactions of a source system with all, many, or one (target) system, respectively, as exemplified in Fig. 10.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com