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These sequence signatures appear to represent abundantly processed and more or less saturated portion of small RNAs in each ovule library (see Additional file 3).
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All major groups of terrestrial organisms are represented abundantly in tropical rainforests.
Beside these, MAP kinases (116), casein kinases (80), calcium-dependent protein kinases' (62), CBL-interacting protein kinases (59) and cyclin-dependent protein kinases (40) were also represented abundantly in the assembled transcriptome data.
Such terms, and the music they represent, are abundantly familiar to music enthusiasts now, but at the time some of them were less well known or understood, and nobody had attempted to gather all of them into a single narrative.
These EST-derived partial proteomes represent mainly abundantly transcribed sequences and therefore lack or have reduced representation of some gene classes and are thus inappropriate for certain type of analyses, such as "gene loss" which is due to lack of evidence rather than true loss.
Many, possibly most, alternative splicing events are represented more abundantly in particular tissues (Castle et al, 2008; Wang et al, 2008).
Predicted genes were scored for orthologous gene families and conserved domains in comparison with other human pathogenic Leishmania spp. Carboxypeptidase, aminotransferase, and 3′-nucleotidase genes and ATPase, thioredoxin, and chaperone-related domains were represented more abundantly in L. (L).
In principle, a word-based method exhaustively counts all the oligomers in a given set of sequences and detects the ones that are represented more abundantly than the background frequencies.
In total, 86 of the clusters represent the different abundantly expressed protein components of the ribosome.
Consequently, the full-length sequences represent the relatively abundantly transcribed, or the shorter genes.
However, these products also preferentially represent those that are abundantly expressed by the hyphal form of the organism, likely reflecting their activity in stress response and adaptation to the local environment [10].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com