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Malde, A. K. et al. An Automated Force Field Topology Builder (ATB) and Repository: Version 1.0.
using the most recent repository version of the ansi or trunk branches.
Differently from the usual repository version graph, it presents a combined version graph of the entire topology (Fig. 9).
For example, for about 20,000 human genes more than 800,000 target sites are predicted (miRBase target repository version 5 [4]).
We obtained genomic loci from the widely adopted miRBase miRNA repository (version 14) [ 46].
For the fifth group (yeast), proteins sequences and their corresponding orthologous relationships were retrieved from Fungal Orthogroups Repository (version 1.1; http://www.broadinstitute.org/regev/orthogroups/).org/regev/orthogroups/
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For the convenience of users we have also packaged the functions into an R package: wateRmelon, which is available from the bioConductor repository from version 2.12 (for R version 3.0 and higher).
Use the original file to manually merge the changes between the repository's version and your local version.
GitHub provides social networking functionality such as feeds, followers, wikis and a social network graph that captures how developers work on their versions ("forks") of a repository, which version is newest, etc. Gitter [20] is a related service that facilitates discussions between members of GitHub communities by providing a long-term chat integrated with code and issues.
We reran the benchmark procedure using the code in the repository and version 2015.09.2 of the RDKit cheminformatics toolkit.
It should be stored in the archive repository and versioned with links to units of archived data to which each version applies.
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