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Moreover, ∼10.0% of reported transcripts are not annotated in the Ensembl database.
Trinity was run with default settings and only reported transcripts of 200 bp or longer.
All reported transcripts contain box A, which is the untranslated 5' part of the first coding exon.
Maningat et al. [ 20] compared their microarray results derived from human milk cytoplasmic crescent RNA with 98 previously reported transcripts in the whole mammary glands of lactating mice.
King et al. [ 20] reported transcripts corresponding to the cytosolic glycolysis pathway, the plastidial glycolytic and Kennedy pathway, which is the most important route to TAG biosynthesis (Fig. 1).
This approach significantly reduces the number of reported transcripts, but the choice of the regularizer is suboptimal, given that all abundance values are positive and the sum is fixed.
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Here, we have identified a novel transcript variant of Bax gene in mouse which contains alternatively spliced new first exon that is different from the first exon of previously reported transcript.
Previous publications have reported transcript expression patterns of specific LuPMEs.
The reported transcript sequences, however, correspond to the mutant genomic sequences of the sequenced strain (iso-1 ).
The majority of 3'-anchored ends of nTARs related to a gene was confirmed in sense direction to their transcripts downstream of the reported transcript end.
There is no reported transcript initiating at this position (Pease et al., 2013), although a short transcript could have been missed.
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