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All reported hits were in addition manually interpreted.
Overall, the lowering of the threshold required to detect a word not in the input set results in a moderate increase in the number of reported hits, which is indicative of a high specificity even with the reduced threshold.
Figure 1 shows a genomic overview of the association and Supplementary Material, Table S2 compares the most significant results from this study with the previously reported hits at each one of the regions.
The reported alignments for the random reads were short and could be filtered out easily, but for non-expert users these reported hits will add to the complexity of the read mapping task.
Gene duplications were detected by aligning predicted proteins back to the genome with Exonerate 2.2.0 using the protein2genome model [ 72] and limiting the reported hits to those above the 50% maximal score obtainable for that query.
A read was considered as correctly mapped if among the reported hits at least one hit fitted the following criteria: i) the original start position (i.e. the position from which the read is generated) was retrieved, ii) the end position was retrieved, and iii) the alignment produced by the mapper showed exactly the same number of insertions, deletions, and substitutions.
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C. K. Foong, also reported hitting an object.
The Argentine cruiser General Belgrano was reported hit by torpedoes fired from a British submarine last night.
Troops responded with "riot dispersal means and live fire" and soldiers reported hitting "the main agitators," the spokeswoman said.
A grain silo was reported hit in the town of Manbij where, military officials say, IS had a logistics hub.
But she said that the forces were not near the town, and that they reported hitting a gunman after they were fired on.
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CEO of Professional Science Editing for Scientists @ prosciediting.com