As an update on the previously reported draft genome of P. mendocina strain S5.2, the availability of complete genome sequences has allowed accurate definition of gene coordinates and recognition of paralogous gene families.
Resequencing analysis based on the previously reported draft genome was performed to compare SNP genotypes of each sample that were called upon using reported draft genome and our assembled scaffolds as reference.
The result of SNP genotype concordance between using the reference of 1) reported draft genome and 2) assembled scaffolds of our study.
The two unknown genes were found to also be present in the previously reported draft genome sequence of Tcc X10 [ 20].
We then performed re-sequencing analysis using the 1) reported draft of common minke whale genome [ 8] and 2) our assembled scaffolds as reference to call SNP genotypes of our 4 common minke whale samples to examine the concordance between two studies (Additional file 1: Table S9).
Using LAST [ 38], we redefined the coordinate of our assembled scaffolds according to the reported draft genome.
