Exact(13)
Wrong alignments may be caused by overlooking alignments with a similar score to the best reported alignment.
To this end, we lowered the alignment score threshold such that even single gene pairs were reported
What is the quality of the reported alignment?
> -wrap-foot> For both aligners, most wrong alignments are caused by overlooking alignments with a similar score to the best reported alignment.
Alignment to the human genome resulted in an average library size of 20.4 million tags with at least one reported alignment (87.1%).
Reported alignment precision for tibial components exceeds ±3° in approximately 50% of TKR [ 10] and exceeds ±10° in approximately 30% of TKR [ 15].
Similar(46)
It reported alignments that included the entire query sequence.
We measure the specificity of the predicted blocks by computing the proportion of genes from all reported alignments or clusters that are also located in simulated blocks.
By introducing flexibility in the alignments, FlexSnap reported alignments with significantly smaller rmsd while maintaining high alignment coverage.
Thus, we consider the best of all reported alignments as the final alignment of the read and discard the others.
To decide the correctness of reported alignments, we use the human rhesus pairwise alignments (rheMac2.hg19.all.chain) provided by UCSC.
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