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When replicating the analyses based on classical test theory for the 11 items, results were very similar for the 2004 and 2007 surveys.
Our goal was to test the robustness of the association between chronic exposure to PM2.5 and mortality observed in the original study (Dockery et al. 1993), and the first extended follow-up of the Harvard Six Cities study (Laden et al. 2006) by replicating the analyses using 11 additional years of follow-up with exposures well below the U.S. annual standard (15 µg/m) (U.S. EPA 1997).
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These datasets are also accompanied by a codebook which describes the variables, the coding transformations necessary to replicate the analyses, and a synopsis of the respective studies.
Next, we replicated the analyses of Kohler et al.18 on our tree, using the fossil calibration points from Kohler et al. ('Kohler et al. calibration scheme 1').
The article states that the analysis followed a pre-specified plan and that an independent academic statistician replicated the analyses.
22 We have also replicated the analyses for different age groups (20 24, 25 29 and 30 34).
In this study, we replicate the analyses adding another form of patch rejection, negative code reviews.
Thanks to the NetworkX software package (Hagberg 2009), all computations could be carried out in Python, and all source codes to replicate the analyses reported here are given in the Additional file 1: supplementary material.
Finally, we replicated the analyses using lipid-standardized concentration values.
We also replicated the analyses using the Clinical Practice Research Datalink (CPRD, previously known as General Practice Research Database (GPRD)).
To rule this out, we replicated the analyses with mouse as a starting point.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com