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Interestingly, both species with more copia-type LTR-RTs than gypsy are also the least repetitive among the diploids and tetraploids.
The contribution of CNV to genome variation among CNV events that are repetitive among siblings with a lineage showed that 1.4%, 1.1%, and 1.4% of genes in the genome were exposed to repetitive CNV in the 16/22, 28/22, and SA/Mock assays, respectively (27,549 genes according to EMBL EBI INTEGR8, A. thaliana genome statistics).
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During the Mecca pilgrimage in 1902, another large outbreak among Hajj pilgrims occurred, and repetitive outbreaks among Mecca pilgrims resulted in the enforcement of strict quarantines.
Although we noted sequence polymorphisms within the Avr3c and Avh27b genes among different P. sojae strains, there was no evidence for copy number variation of the repetitive unit among strains, as described for Avr1a and Avr3a.
Distinct from both 16/22 and SA/Mock assays, repetitive microduplications among siblings were prominent in the 28/22 assays.
For instance, 265 out of 290 genes exposed to repetitive CNVs among siblings were located on chromosome 2 from the 28/22 CGH assay.
Further comparative genomic analysis identified a total of 1871 non repetitive SNPs, among which a common pool of 1102 SNPs were shared by the 7 isolates.
With respect to point (a), we now show that there is indeed a significant increase in the incidence of repetitive spiking among muscle afferents.
That large salamander introns might have a functional role is supported by the absence of shared repetitive sequences among introns and the prediction of numerous miRNA and snoRNA genes in axolotl introns.
In conclusion, our results agree with a main outcome of recent studies indicating that breakpoints overlap with a diversity of repetitive families among different groups [ 5], which thus may include rDNA clusters.
Following this filtering step, the alignable fraction was composed of 39.9% genes and 35.1% TEs, reflecting the relative uniqueness of gene sequences and the concentration of unalignable repetitive sequences among TEs (supplementary fig. S5, Supplementary Material online).
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