However, jerky artifacts are frequently observed, because the repetition method does not take into account moving objects.
The idea of repeating users' messages was later improved through irregular repetition method [8] where the number of replicas sent by the users follows a specific probability distribution function.
The programs phyml [33], clann [34] and seqboot (PHYLIP packages [35]) constructed two trees (with 100 bootstrap repetitions) (Methods S4) based on these alignments.
The second one, discovery-based approach, makes use of repetition detection methods to discover new and unknown ads from an existing collection and keep a database of all these advertisements for matching and detection of their recurrences [5 8].
Repetition-based methods and linear interpolation methods have been proposed, and they can be classified as non-motion-compensated approaches[3 6].
On the other hand, the actual spectral efficiency of the proposed scheme is reduced by the utilization of the repetition coding method.
Unless otherwise specified, default parameters were used for Hapler ("Binomial" SNP calling with default parameters, minimum of 20 coloring repetitions, see Methods).
These repeats are usually complex repeats that are not annotated in UniProt, nor detected as runs of identical amino acid repetitions (see Methods), and thus contribute to the percentage of indels in unique sequence in non- Hox genes (Table 3).
To correct for this bias, we devised a simple method which discards reads mapped to a known segmental duplication and uses the number of reads mapping to the neighbourhood of repeats to estimate the true interaction between loci containing repetitions (see Methods).
To assess the statistical significance of the results, confidence intervals were calculated for the slope of the linear fit using 1000 bootstrap repetitions (percentile method) [31] except for observer VK where 5000 repetitions and the BCa method was used to calculate confidence intervals for each individual CLT due to a bias in the resampled statistics [32].
